species:   Scscl
pid:       PID1566
parent:    Ssc-milR-42
paralog:   
locus:     NW_001820814.1:403280-403358
matures:   ['UUGUAUAGAGCUUCGUGCUCAA', 'UAGCAUAAAGAUCUAUAUAGUCAG']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820814.1:403280-403358

2 out of bounds
11 alignments
7 proper strand
5 stranded perfect matches

         **************************          ************************          
CUGAAGGUCCAUAGCAUAAAGAUCUAUAUAGUCAGGACGAAUUUCCUUUGUAUAGAGCUUCGUGCUCAAGAUCAAUCAU
.(((.((((...(((((.(((.(((((((((..((((......))))))))))))).))).)))))...))))..))).
-----------------------------------------------UUGUAUAGAGCUUCGUGCUCAA---------- l=22 a=0 c
-----------UAGCAUAAAGAUCUAUAUAGUCAG-------------------------------------------- l=24 a=0 c*
------------------------UAUAUAGUCAGGACGAAUUUCCU-------------------------------- l=23 a=2 ma
-----------UAGCAUAAAGAUCUAUAUAGUCAG-------------------------------------------- l=24 a=0 ma*

----------AUAGCAUAAAGAUCUAUAa-------------------------------------------------- l=19 a=1 
------------------------UAUAUAGUCAGGACGAAUUUCCU-------------------------------- l=23 a=2 (ma)
----------------------------UAGUCAGGACGAAUUUg---------------------------------- l=17 a=1 
----------------------------UAGUCAGGACGAAUUUCCUUU------------------------------ l=21 a=1 
----------------------------UAGUCAGGACGAAUUUCCUUUG----------------------------- l=22 a=2 

mb-00010
ax-1011011
ku-01
ss-101110101100
fn-101
